Hi Vojtech, A VCF file for the 69 public genomes is available for download on our ftp site: …
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The VAR files are located in the ASM directory and contain annotated variants. The MAP directory contains the raw reads and mappings used to assemble the genome. If you are getting started…
I wrote a few very, very basic scripts for generating Circos plots for coverage, variant density, dbSNP coverage, and CNVs that work with 1.x files. They're not the same thing as the CGI Circos…
I am very excited to announce the launch of a new version of our online community, which is based on direct feedback from you, our community users. I hope you’ll continue to communicate with one…
Hi all, is there a way to obtain the adapter sequences utilised by Complete genomics? Or is it proprietary? I actually require them for input in a software. Any idea? Thanks, R.
Complete Knowledge 2012: Nürnberg, June 21-22, 2012 Present your research at Complete Knowledge 2012: Nürnberg! Complete Knowlege 2012: Nürnberg promises to be a great conference--with your…
Our CGI data of >100 samples is soon starting to be delivered. We are looking for a comparison (European/Mediterranean) population on the same platform. Please contact me (itsik@cs.columbia.edu) if…
Accept samples in 2-D barcoded tubes rather than in barcoded plates, to simplify sending small numbers of samples
Has anyone experimented this. I just found the feature while reading the CLC manual for version 5.1 (p441) 19.1.7 Complete Genomics With CLC Genomics Workbench 5.1 you can import evidence files from…
Dear Diego, RTG indeed maps CG reads as well as almost all providers read types. RTG is very comparable to CG as a matter of calls, it calls less than what CG provides but is very consistent in the…
hi. i've just recieved my first paired sequences of matched tumor-normal genomes from CompleGenomics, and was wondering if there is any combined file that compare their genetic variants. …
Hi, The segmentation fault error is quite well explained, It's nice you have this forum. Perhaps it's just me but I find this process of "directory structure reconstruction" rather unnecessary and…
Such tools would be good thing to compare HIghConfJunctions... and HIghConfidenceSvEvents... to similar results obtained outside CG and define recall and or specificities. Could you post a…